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New AI-based Algorithm Predicts Potential Energy State of Individual Molecules

Published on 2022-01-13. Edited By : SpecialChem

TAGS:  Science-based Formulation    

New Algorithm Predicts Potential Energy State of Individual MoleculesResearchers from the Berlin Institute for the Foundation of Learning and Data (BIFOLD) at TU Berlin and Google Research have successfully developed an algorithm to precisely and efficiently predict the potential energy state of individual molecules using quantum mechanical data.

New Opportunities for Material Scientists


The use of AI in classical sciences such as chemistry, physics, or mathematics remains largely uncharted territory. Their findings offer new opportunities for material scientists.

Quantum mechanics, among other things, examine the chemical and physical properties of a molecule based on the spatial arrangement of its atoms. Chemical reactions occur based on how several molecules interact with each other and are a multidimensional process,” explains BIFOLD Co-Director Prof. Dr. Klaus-Robert Müller.

Being able to predict and model the individual steps of a chemical reaction at the molecular or even atomic level is a long-held dream of many material scientists.

Every Individual Atom in Focus


The potential energy surface, which refers to the dependence of a molecule’s energy on the arrangement of its atomic nuclei, plays a key role in chemical reactivity. Knowledge of the exact potential energy surface of a molecule allows researchers to simulate the movement of individual atoms, such as during a chemical reaction. As a result, they gain a better understanding of the atoms’ dynamic, quantum mechanical properties and can precisely predict reaction processes and outcomes.

Imagine the potential energy surface as a landscape with mountains and valleys. Like a marble rolling over a miniature version of this landscape, the movement of atoms is determined by the peaks and valleys of the potential energy surface: this is called molecular dynamics,” said Dr. Oliver Unke, a researcher at Google Research in Berlin.

Unlike many other fields of application of machine learning, where there is a nearly limitless supply of data for AI, generally only very few quanta mechanical reference data are available to predict potential energy surfaces, data which are only obtained through tremendous computing power.

On the one hand, exact mathematical modeling of molecular dynamic properties can save the need for expensive and time-consuming lab experiments. On the other hand, however, it requires disproportionately high computing power. We hope that our novel deep learning algorithm – a so-called transformer model which takes a molecule’s charge and spin into consideration – will lead to new findings in chemistry, biology, and material science while requiring significantly less computing power,” said Klaus-Robert Müller.

In order to achieve particularly high data efficiency, the researchers’ new deep learning model combines AI with known laws of physics. This allows certain aspects of the potential energy surface to be precisely described with simple physical formulas. Consequently, the new method learns only those parts of the potential energy surface for which no simple mathematical description is available, saving computing power. “This is extremely practical. AI only needs to learn what we do not yet know from physics,” explains Müller.

Spatial Separation of Cause and Effect


Another special feature is that the algorithm can also describe nonlocal interactions. “Nonlocality” in this context means that a change to one atom, at a particular geometric position of the molecule, can affect atoms at a spatially separated geometric molecular position.

Due to the spatial separation of cause and effect – something Albert Einstein referred to as “spooky action at a distance” – such properties of quantum systems are particularly hard for AI to learn. The researchers solved this issue using a transformer, a method originally developed for machine processing of language and texts or images.

The meaning of a word or sentence in a text frequently depends on the context. Relevant context information may be located in a completely different section of the text. In a sense, language is also nonlocal,” explains Müller.

With the help of such a transformer, scientists can also differentiate between different electronic states of a molecule such as spin and charge. “This is relevant, for example, for physical processes in solar cells, in which a molecule absorbs light and is thereby placed in a different electronic state,” explains Oliver Unke.

Source: Bifold


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